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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31512479_31512911_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31512479 - 31512911
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCACACAAAC
Flanking Amino Acid:
FFSLKQKNLMDSFHVPTEDW
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.9
0.63
0.9
71.9
38
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
45.7
-0.3
2
64.37
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001809
31511628 - 31517457
5830