About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31513060_31515330_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31513060 - 31515330
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGCT
5'SS Class:
major
3'SS Sequence:
TCCTTGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
63.4
41.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.8
0.56
1
71.1
38.6
Minor 5ss
37.2
-1.4
3.7
56.9
47.4
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001816
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001809
31511628 - 31517457
5830