Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31556865_31558194_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31556865 - 31558194

Intron Length:

1330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTATCCCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTATCCCCAACA

Flanking Amino Acid:

VKIDLQVPSSESKALAITSK

Intron Amino Acid Position:

666

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

80.7

34.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

72.3

0.5

0.9

67.2

33.8

Minor 5ss

45.2

-0.5

3.1

63.7

Minor BPS

62.4

0.39

1.9

77.97

38.1

Associated Gene:

Gene:

RTF1

Ensembl Gene ID:

ENSAPLG00000013054

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013651

31556758 - 31584853

28096