About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31558307_31558592_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31558307 - 31558592
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATTTACTTATTT
Flanking Amino Acid:
LPDAPKDMSKGQGKDKDVNS
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
89.2
28.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
34.4
-1.8
4
52
45.2
Minor BPS
65.2
0.55
1.8
83.5
37.5

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096