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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31558689_31559787_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31558689 - 31559787
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CACCACTTAACA
Flanking Amino Acid:
RQCKPTIVSNSRDPAVQAAI
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.2
30.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
30
-2.3
3.1
37.1
40.4
Minor BPS
59
0.28
1.6
63.15
42.6

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096