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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31560977_31562105_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31560977 - 31562105
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGGTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GCCTAATGAATT
Flanking Amino Acid:
MKKTQLLKEKAMAEDLGDQD
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
67.7
0.44
1
58
38.9
Major PPT
67.7
0.4
1.2
67.5
42.8
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
45.8
-0.2
1.9
59.82
43.4

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096