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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31563037_31564471_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31563037 - 31564471
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAGAA
U12 Branch Point Sequence:
TGTACCATAAGA
Flanking Amino Acid:
GTRTNKGLQLRHGSDQRVFR
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
49.7
-0
1
47.1
36.1
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
54.7
0.14
2
70.26
41.4

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096