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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31564555_31565511_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31564555 - 31565511
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCTTTTGCATA
Flanking Amino Acid:
GNHNSKPVYRVAEITGVVET
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74.8
0.56
0.9
69.6
35.9
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
47.9
-0.1
1.8
62.75
38.6

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096