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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31565690_31566188_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31565690 - 31566188
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTACCAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCCTTCTCAACT
Flanking Amino Acid:
SRSSSSDEEEEKEEIPPKSQ
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.5
40.6
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
66.5
0.37
1
65.1
40.1
Minor 5ss
38.7
-1.3
2.8
48
41.7
Minor BPS
67.6
0.63
1.6
79.4
43

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096