About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31566326_31567169_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31566326 - 31567169
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCTTGTTGC
5'SS Class:
major
3'SS Sequence:
CTCTCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAG
U12 Branch Point Sequence:
TTTTCCTTGTTC
Flanking Amino Acid:
EKRKNRTGMKLNCLQKKQPL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
63
45.7
Major BPS
48
-0.1
1.5
60.7
37.6
Major PPT
79.8
0.67
0.7
72.4
32.3
Minor 5ss
32.7
-2
3.7
44.6
43.2
Minor BPS
51.3
0.02
3.5
81.45
33.4

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096