About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31567290_31568895_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31567290 - 31568895
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCGTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TGCACTTCAATG
Flanking Amino Acid:
KKLTQIQESQVMSHNKERRS
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
72.2
0.5
0.9
69.1
41.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
49.5
-0.1
1.6
52.86
42.4

Associated Gene:

Gene:
RTF1
Ensembl Gene ID:
ENSAPLG00000013054
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013651
31556758 - 31584853
28096