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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31586032_31587829_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31586032 - 31587829
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TAATAATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTATTAATA
Flanking Amino Acid:
YCSMRAKPPVGSFARKKYYD
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.9
0.45
1
63.4
42.3
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
68.4
0.57
1.5
76.99
33.5

Associated Gene:

Gene:
NDUFAF1
Ensembl Gene ID:
ENSAPLG00000013480
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014039
31585410 - 31590235
4826