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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31588016_31588170_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31588016 - 31588170
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TGTTCTTTTTTT
Flanking Amino Acid:
RGGPYWEEIRIPFSKFFLSS
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.6
39.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.7
0.78
0.9
85.4
29.3
Minor 5ss
43.7
-0.7
2.8
48.7
47
Minor BPS
43.8
-0.4
3.6
76.14
40.9

Associated Gene:

Gene:
NDUFAF1
Ensembl Gene ID:
ENSAPLG00000013480
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014039
31585410 - 31590235
4826