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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31593383_31594196_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31593383 - 31594196
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTACAATTAATA
Flanking Amino Acid:
TRNNDLAASKVVTPFKFGAH
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
54.6
45
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
35
-1.7
3.3
37.8
47.1
Minor BPS
49.1
-0
1.8
60.2
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013570
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014134
31592056 - 31603618
11563
ENSAPLT00000038590
31592056 - 31603618
11563