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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31596447_31597239_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31596447 - 31597239
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGTATGTTAACT
Flanking Amino Acid:
NCSSSLNEVKKRTAGKTFLF
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
75.9
0.58
0.8
69.4
36.9
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
55.9
0.26
2.1
75.62
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013570
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014134
31592056 - 31603618
11563