Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31596706_31597239_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31596706 - 31597239

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTGGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATTAT

U12 Branch Point Sequence:

GTATGCTTAATG

Flanking Amino Acid:

NCSSSLNEVKVLAKKSNLLR

Intron Amino Acid Position:

270

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

64.6

0.36

1.1

55.7

39.9

Major PPT

82.3

0.73

80.8

36.6

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

61.5

0.22

1.9

64.99

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013570

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038590

31592056 - 31603618

11563