Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3160660_3160966_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3160660 - 3160966

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TGCCTCTGCGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

CTGTATTCATCC

Flanking Amino Acid:

QMDSFQAAPVRPGLESITDR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

35.3

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

65.2

0.34

0.9

61.1

Minor 5ss

33.8

-1.8

2.9

43.7

43.6

Minor BPS

-0.3

1.9

55.04

43.4

Associated Gene:

Gene:

CALCB

Ensembl Gene ID:

ENSAPLG00000008604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008954

3160564 - 3162318

1755