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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3161099_3161924_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3161099 - 3161924
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
EELEQASEGNSLDRPISKRC
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
60.8
0.27
1.2
51.8
43.6
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
CALCB
Ensembl Gene ID:
ENSAPLG00000008604
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008954
3160564 - 3162318
1755