Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31627094_31628538_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31627094 - 31628538

Intron Length:

1445

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTAAA

5'SS Class:

major

3'SS Sequence:

GATTTCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ATTAACTGAAAT

Flanking Amino Acid:

SAISFAEFVKVLEKVDVEQK

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.2

75.3

36.2

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

77.7

0.62

0.9

70.8

39.4

Minor 5ss

-2.3

2.7

33.5

41.8

Minor BPS

53.7

0.19

1.8

75.31

40.2

Associated Gene:

Gene:

CHP1

Ensembl Gene ID:

ENSAPLG00000013582

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026174

31625732 - 31639709

13978

ENSAPLT00000014163

31625732 - 31643034

17303