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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31632010_31638260_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31632010 - 31638260
Intron Length:
6251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTGCTTTACT
Flanking Amino Acid:
SLDKGENGTLSREDFQRIPE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
78.8
35.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.6
0.53
0.9
73.8
35.8
Minor 5ss
35.6
-1.6
2.9
46
42.3
Minor BPS
63.7
0.51
2.1
84
43

Associated Gene:

Gene:
CHP1
Ensembl Gene ID:
ENSAPLG00000013582
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026174
31625732 - 31639709
13978
ENSAPLT00000014163
31625732 - 31643034
17303