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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31643416_31644109_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
31643416 - 31644109
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGAGGCT
5'SS Class:
weak_major
3'SS Sequence:
TCCCTGATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TACTCCCTGATT
Flanking Amino Acid:
SPDRRLFLRTVKNLETGRST
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.4
58.5
37.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
75.5
0.57
0.9
69
35.7
Minor 5ss
25.2
-2.8
3.6
39
46.4
Minor BPS
61.6
0.45
1.7
76.76
40

Associated Gene:

Gene:
EXD1
Ensembl Gene ID:
ENSAPLG00000013650
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041521
31643289 - 31662915
19627