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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31644179_31645204_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31644179 - 31645204
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
ATTTCTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AATTGTTTATTT
Flanking Amino Acid:
KLFFEHEIASVEVLDELDSG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.2
39.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79.9
0.67
0.8
75.1
33.9
Minor 5ss
26.7
-2.7
3.1
31.2
36.3
Minor BPS
50.9
0.11
2
71.01
40.6

Associated Gene:

Gene:
EXD1
Ensembl Gene ID:
ENSAPLG00000013650
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041521
31643289 - 31662915
19627