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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31674077_31675507_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31674077 - 31675507
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATC
5'SS Class:
strong_major
3'SS Sequence:
ACATCCACTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTCCATGAGT
Flanking Amino Acid:
HQSKYSKDKELQQYQYYSAG
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
81.4
30.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
68.6
0.42
0.9
63.8
37.1
Minor 5ss
37.4
-1.4
3.2
51.9
44.9
Minor BPS
58.6
0.35
2
80.14
42

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672