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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31677120_31678133_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31677120 - 31678133
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TACCCTTTAAGT
Flanking Amino Acid:
LSIVKKELPKAYKQKASARN
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
84.9
0.79
0.7
80.3
31.8
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
61.9
0.45
1.7
74.26
42.6

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672