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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31681735_31682054_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31681735 - 31682054
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGTCCATCATCT
Flanking Amino Acid:
EDAYQIHQARTRSFDEDAKE
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
81.7
0.71
0.8
81.5
30.4
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
48.1
-0
2.1
72.47
43.5

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672