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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31682265_31682843_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31682265 - 31682843
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GGATCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GGATCTTTCACA
Flanking Amino Acid:
MNWLANLYEQGINGILADEM
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
71.3
0.48
1
64.5
41.2
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
58
0.25
1.8
65.74
40.5

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672