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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31691574_31692363_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31691574 - 31692363
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
QIRVFNHSRDRWLRVLLSPF
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.97
0.9
64.6
46.9
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
86.7
0.83
0.8
84.1
30.8
Minor 5ss
26.9
-2.7
3.9
37.6
47.1
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672