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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31693999_31694841_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31693999 - 31694841
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGCGTTTTATTT
Flanking Amino Acid:
ANLMNQGHLARWLALYLSLK
Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
48.8
-0
1.6
63.03
42.4

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672