Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31719865_31721496_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31719865 - 31721496

Intron Length:

1632

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAGGTGAA

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TTTTATTTAATC

Flanking Amino Acid:

LGINLTAADTVIFYDSDWNP

Intron Amino Acid Position:

1195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

68.9

Major BPS

90.7

1.01

0.7

19.9

Major PPT

95.6

1.03

0.5

91.4

20.1

Minor 5ss

31.1

-2.2

3.4

39.8

46.2

Minor BPS

75.6

0.78

1.3

83.1

29.9

Associated Gene:

Gene:

INO80

Ensembl Gene ID:

ENSAPLG00000013656

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014312

31671099 - 31727770

56672