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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31721656_31723155_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31721656 - 31723155
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AGTAATTTATTC
Flanking Amino Acid:
ILQRAKEKSEIQRMVISGGN
Intron Amino Acid Position:
1248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.7
0.8
0.6
80.5
31.5
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
46.7
-0.2
1.7
55.23
36.8

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672