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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31725927_31726709_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31725927 - 31726709
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTGTTTTAACA
Flanking Amino Acid:
ITGSVSDTMNGVSMQDTPLT
Intron Amino Acid Position:
1417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
77.1
37.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
33.9
-1.8
2.7
41.7
38.3
Minor BPS
65
0.47
1.4
68.42
38.7

Associated Gene:

Gene:
INO80
Ensembl Gene ID:
ENSAPLG00000013656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014312
31671099 - 31727770
56672