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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31741861_31742029_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31741861 - 31742029
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
CCGCCCCAAACT
Flanking Amino Acid:
RVVTLMEDGGACTWGVAYKV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.4
40.3
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
78.9
0.65
0.9
72.7
37.5
Minor 5ss
30.2
-2.3
2.5
26.6
35.9
Minor BPS
46.4
-0.1
2
61.63
47.8

Associated Gene:

Gene:
CHAC1
Ensembl Gene ID:
ENSAPLG00000001819
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001812
31741429 - 31742296
868