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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31770991_31771442_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31770991 - 31771442
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
DRCTSNPCANDGNCFYLGQI
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
DLL4
Ensembl Gene ID:
ENSAPLG00000014194
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014810
31769381 - 31781085
11705