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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31771663_31772711_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31771663 - 31772711
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
GTGGCATCAAAT
Flanking Amino Acid:
NPCRNGGSCTDLENGYHCLC
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
46.1
-0.2
2
63.82
45.6

Associated Gene:

Gene:
DLL4
Ensembl Gene ID:
ENSAPLG00000014194
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014810
31769381 - 31781085
11705