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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31772882_31774248_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31772882 - 31774248
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GGTATCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTTCTCTAACA
Flanking Amino Acid:
EGWGGLFCDQDLNYCTHHKP
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77
32.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
76.7
0.6
1
69.5
41.5
Minor 5ss
37.8
-1.4
2.6
45.9
42.2
Minor BPS
76.4
0.83
1.6
88.12
28.9

Associated Gene:

Gene:
DLL4
Ensembl Gene ID:
ENSAPLG00000014194
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014810
31769381 - 31781085
11705