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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31774380_31774498_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31774380 - 31774498
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAATTTGACT
Flanking Amino Acid:
NGYCNKPGECICRPGWQGRY
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.3
0.75
0.7
81.7
29.5
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
66.8
0.61
1.5
85.01
35

Associated Gene:

Gene:
DLL4
Ensembl Gene ID:
ENSAPLG00000014194
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014810
31769381 - 31781085
11705