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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31775899_31776687_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31775899 - 31776687
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAAGGAGG
5'SS Class:
major
3'SS Sequence:
CCTTGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGCTGCTGACAC
Flanking Amino Acid:
LRSERRARPRGSQLPSEDWL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.2
68.6
42.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
74.2
0.54
0.8
65.2
36.3
Minor 5ss
20.9
-3.4
3.7
22.4
37.3
Minor BPS
40.2
-0.7
2.1
45.98
42.2

Associated Gene:

Gene:
DLL4
Ensembl Gene ID:
ENSAPLG00000014194
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014810
31769381 - 31781085
11705