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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31896670_31897323_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31896670 - 31897323
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCAACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
GTCTGTTCAACT
Flanking Amino Acid:
YEEAVDLALQVDVDLAKSCA
Intron Amino Acid Position:
806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
69.6
0.44
0.9
59.5
41.6
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
52.7
0.16
2
72.55
44.5

Associated Gene:

Gene:
VPS18
Ensembl Gene ID:
ENSAPLG00000016030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016722
31895941 - 31904324
8384