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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31899195_31899905_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31899195 - 31899905
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCTAT
U12 Branch Point Sequence:
TTTGTTCTATCC
Flanking Amino Acid:
RVYKMFLDHTGSHLLIALNT
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
56.1
0.15
1.5
58.5
47.9
Major PPT
70.5
0.46
0.9
62.3
34.7
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
48
-0.1
2
65.93
40.3

Associated Gene:

Gene:
VPS18
Ensembl Gene ID:
ENSAPLG00000016030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016722
31895941 - 31904324
8384