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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31899998_31900181_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31899998 - 31900181
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTCTTTCATA
Flanking Amino Acid:
CMSLGKDTLLRIDLGKPDEP
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
59
0.28
1.7
67.71
39.6

Associated Gene:

Gene:
VPS18
Ensembl Gene ID:
ENSAPLG00000016030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016722
31895941 - 31904324
8384