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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31912030_31915215_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31912030 - 31915215
Intron Length:
3186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
TTTCCTTAGACT
Flanking Amino Acid:
YQPTALDTFSVQVLVDGAPV
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
82.1
0.72
0.8
76.1
32.5
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
64.8
0.55
1.7
84.49
36.3

Associated Gene:

Gene:
RHOV
Ensembl Gene ID:
ENSAPLG00000016130
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016822
31911834 - 31916022
4189