Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31915275_31915581_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31915275 - 31915581

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTGAA

U12 Branch Point Sequence:

CAGTGAAGACTT

Flanking Amino Acid:

RIQLWDTAGQEDFDCLRSLC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

23.3

Major BPS

51.9

0.05

1.2

44.7

38.6

Major PPT

89.2

0.88

0.6

84.8

22.9

Minor 5ss

37.4

-1.4

2.9

50.4

Minor BPS

32.1

-1.2

43.73

40.4

Associated Gene:

Gene:

RHOV

Ensembl Gene ID:

ENSAPLG00000016130

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016822

31911834 - 31916022

4189