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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31939982_31942289_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31939982 - 31942289
Intron Length:
2308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACATGAAAT
Flanking Amino Acid:
KGSVGGRQMPDAREFNRLQK
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
51
0.11
1.9
74.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034088
31935521 - 31953536
18016