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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31941010_31941809_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31941010 - 31941809
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
GTTTCTGATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGAACT
Flanking Amino Acid:
PLPESLQLPSVCNGNCQAPS
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
52.8
45.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.2
0.48
1
66.5
39.7
Minor 5ss
43.8
-0.7
2.9
56.4
47.8
Minor BPS
63
0.49
1.9
87.84
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042150
31935521 - 31953536
18016