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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31945665_31953054_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31945665 - 31953054
Intron Length:
7390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
ACTTCTTCCACA
Flanking Amino Acid:
YEAMPKHGSNDDRPPIARIG
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
66.6
39.9
Major BPS
69.2
0.48
1
61
37.1
Major PPT
78.3
0.64
0.8
72.5
31.6
Minor 5ss
37.2
-1.4
3.3
46.9
44
Minor BPS
50.9
0.02
2
65.52
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016133
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042150
31935521 - 31953536
18016
ENSAPLT00000034088
31935521 - 31953536
18016
ENSAPLT00000016851
31935521 - 31953536
18016