About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31965417_31965632_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31965417 - 31965632
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATAG
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTTATAAAACT
Flanking Amino Acid:
PNEEQKLKLQEILHECSSPT
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.6
39.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83
0.74
0.7
81.2
30.9
Minor 5ss
32.7
-2
2.9
38.5
46.5
Minor BPS
49.2
0.02
2.1
76.27
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030377
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018242
31960744 - 31968654
7911