About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31965666_31967689_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31965666 - 31967689
Intron Length:
2024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTTCCTACAATT
Flanking Amino Acid:
ILHECSSPTEDFITELLSRL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
79.8
0.67
0.8
74.5
29.9
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
49.1
0.01
1.8
70.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030377
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018242
31960744 - 31968654
7911