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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31973161_31974540_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31973161 - 31974540
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTACTCTTGACT
Flanking Amino Acid:
DGDLYCQRCFREGHDEFDLK
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80.2
0.68
0.8
77.7
36.7
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
74.1
0.84
1.1
85.28
34.4

Associated Gene:

Gene:
ZFYVE19
Ensembl Gene ID:
ENSAPLG00000000937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000960
31973094 - 31983311
10218