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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31976287_31977076_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31976287 - 31977076
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAAGT
5'SS Class:
major
3'SS Sequence:
CTGTTACTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTGTTACT
Flanking Amino Acid:
EEAIRRVLKQLTEEAALDEA
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.3
75.5
40.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.1
0.47
1
63.6
41.9
Minor 5ss
30.6
-2.2
2.9
41.4
44.6
Minor BPS
53.3
0.19
2.3
79.44
43

Associated Gene:

Gene:
ZFYVE19
Ensembl Gene ID:
ENSAPLG00000000937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000960
31973094 - 31983311
10218