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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31979365_31980344_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31979365 - 31980344
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCTGAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAATT
Flanking Amino Acid:
LQKLREERKPKSIPSQAEIE
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.3
0.61
0.9
70.5
38.9
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
72.5
0.79
1.3
85.49
34.4

Associated Gene:

Gene:
ZFYVE19
Ensembl Gene ID:
ENSAPLG00000000937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000960
31973094 - 31983311
10218